MiniOne Protocol Adaptation: Edvotek #118

How to use the Edvotek Cholesterol Diagnostic Kit (#118) with The MiniOne Electrophoresis System

March 21, 2016

This guide is a protocol adaptation provided to assist teachers in adapting the Edvotek Cholesterol Diagnostics Kit (#118) for use with the MiniOne Electrophoresis System. The Cholesterol Diagnostics lab introduces students to the genetics of familial hypercholesterolemia (FH) through the gel electrophoresis analysis of simulated DNA samples from five affected individuals in a family. The MiniOne produces excellent results with this lab, demonstrating separation of 4282 and 3000 bp bands within 20 minutes. Traditional electrophoresis systems require a longer run time (at least 30 minutes) or a higher voltage to produce comparable separation. The higher sensitivity of the GelGreen fluorescent stain over the FlashBlue stain supplied with the kit means that five-fold lower concentration of DNA can be used and your kit can go farther. By eliminating high voltage, UV light, and toxic ethidium bromide, safety is guaranteed and students can perform all steps of the experiment at their benches. This setup simplifies classroom management and keeps students engaged through the whole lab.

Required Materials

Reagents Supplied With Edvotek Kit:
• Concentrated 50x tris acetate EDTA (TAE) electrophoresis buffer
• QuickStrip DNA samples
• Practice gel loading solution

Other Supplies:
• 0.8% GreenGel-in-a-Cup with TAE buffer (cat. #M3140TAE)
• 0.6 mL microcentrifuge tubes (cat. #M3107 or #M3108), 8 per station
• Disposable tips for 2-20 µL micropipette (cat. #M3111)
• Distilled (DI) water

MiniOne Electrophoresis System (cat. #M1010):
• 42V power supply
• Running tank
• Carriage base
• Photo hood
• Conical flask

MiniOne Casting System (included in cat. #M1010):
• Casting stand
• Gel trays
• Gel combs

Other Equipment:
• Microwave oven
• 2-20 µL micropipettes, one per group (included in cat. #M1010, or separately cat. #M2008)
• Digital camera or cell phone with camera
• Benchtop mini-centrifuge (MiniOne Centrifuge, cat. #M2031)

Before the Lab

Prepare the running buffer
The kit is supplied with concentrated 50x tris acetate EDTA (TAE) buffer solution.
Each MiniOne gel run requires 135 mL of buffer.

1) Dilute 1 volume of the concentrated 50x buffer with 49 volumes DI water.

2) Following the above calculation, add 30 mL of the concentrated buffer to 1470 mL of DI water for 1500 of 1x TAE running buffer.

3) Optional: using the conical flasks supplied with the MiniOne units, aliquot 135 mL of 1x TAE running buffer for each student group.

# Groups Volume 50X TAE (mL) Volume DI Water (mL) Final Volume (mL)
5 17 833 850
6 19 931 950
7 22 1078 1100
8 25 1225 1250
9 27 1323 1350
10 30 1470 1500

 

Dilute and aliquot the DNA samples
Each tube in the Edvotek QuickStrip contains 38 µL of DNA sample. The fluorescent DNA labeling provided by MiniOne GreenGel-in-a-Cup is much more sensitive than the FlashBlue post-stain supplied with the kit. We therefore recommend diluting the samples from the QuickStrip 1:5 and using 10 µL of the diluted sample in each well. This means that each kit can be used for several classes. The following instructions are for ten student groups.

1) Label 8 microcentrifuge tubes for the samples.

2) Flick the QuickStrip with your finger to make sure the samples are well mixed.

3) Either tap the QuickStrip on the bench to make sure all of the sample is collected at the bottom of the tubes or spin down in a centrifuge using a rotor designed for strips of PCR tubes.

# Groups Volume DNA Sample (µL) Volume practice loading buffer (µL) Final Volume (µL)
5 18 72 90
6 21 84 105
7 24 96 120
8 27 108 135
9 30 120 150
10 33 132 165

4) Using a micropipette with a disposable tip, pierce the foil covering of the QuickStrip tube, withdraw the required amount of sample and dispense into a microcentrifuge tube. Repeat for all 8 samples.

5) To each microcentrifuge tube add the required amount of practice gel loading solution. Flick or vortex to mix the dye and DNA sample, then tap on the bench or centrifuge to collect all of the diluted sample at the bottom of the tube.

6) Label a set of 8 microcentrifuge tubes for each of the student groups.

7) Aliquot 15 µL of each diluted sample into the labeled microcentrifuge tubes.

Set up stations for each student group
• 1 MiniOne Casting System
• 1 MiniOne Electrophoresis System with photo hood
• 1 of the 0.8% GreenGel-in-a-Cup with TAE buffer
• 8 DNA sample aliquots
• 1 micropipette (2-20 µL) and micropipette tips

MiniOne Gel Loading and Running Instructions:

Running TAE gel on MiniOne
 

Example Results:

Edvotek kit DNA samples diluted
Lane 1: Molecular weight marker
Lane 2: Normal control DNA sample
Lane 3: FH homozygote control
Lane 4: DNA sample 1
Lane 5: DNA sample 2
Lane 6: DNA sample 3

After 20 minutes DNA band separation is visible in all samples.

Gel from lab 118

Purchasing Information:

  • 0.8% GreenGel-in-a-Cup with TAE buffer: Cat. #M3140TAE
  • MiniOne Centrifuge: Cat. # M2031
  • MiniOne Pipette 2-20 µL: Cat. #M2008
  • MiniOne Electrophoresis Units Classroom Package: Cat. #M1010*
  • 0.6 mL Microcentrifuge Tubes, Rainbow: Cat. #M3108
  • Universal Fit Pipette Tips: Cat. #M3111

*10 Free 2-20 µL micropipettes (M2008) included in M1010

Download Here


Edvotek Lab 118 – Cholesterol Diagnostics from https://www.edvotek.com/118 Edvotek is a registered trademark of EDVOTEK, Inc.

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